MmuEX0020824 @ mm9
Exon Skipping
Gene
ENSMUSG00000085767 | Gm13563
Description
predicted gene 13563 [Source:MGI Symbol;Acc:MGI:3652052]
Coordinates
chr2:26243118-26244538:+
Coord C1 exon
chr2:26243118-26243302
Coord A exon
chr2:26243762-26243912
Coord C2 exon
chr2:26244074-26244538
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTCTTGGTTTTTCAAGACAGGGT
3' ss Score
2.3
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GCTGAGGTTCTTGGTTTTCAAAAACTCTTTGAAGGAGAATGGATTGGCTTCTTCAAGGTCTTCAAGTTTGTCACCTGAAAAAACGAACACCACAGAAGACTGTGAAAGGGCCCAACATCCTGTGTTACCATCACGTTTCAACTGTAACTCAAAGAACATTACAGAACATGAGAGCTGCCAAAGAG
Seq A exon
GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGACCTCGAACTCAGAAATCCGCCTACCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCGGCTCCACTGCTCTTTTGGGCTCCAG
Seq C2 exon
CCAAAACCTGCAAAAAGACATGGTCAGCTCACCGTGATCACAGCAAGCCTTATGACTGCAGCGTTTGTCCAGGGAGGTGAAGACCGCAGACGCCTGACTCCCACTGAGTCTGGGACTAGAAAGCTGTCTTCTGAGGCTGGATGCGGTAAACTACACATCCCTGCGCGCTCTAAGAGCAGCTGCAGGTGGAACGCAGACCCGCTAGGTCCAGCCCCTGGCCTTGCCCAAGCCGGTGGGCTTAAGTGGCCTCCGAGCTCCACCAGGCACTACCTTCCTGCCTTGAGGCGGGCGGGCGGGCTGTGGGGAGGGCTCCCCGCGCTGCCCAGCTCCGCACTGTGGCCGGCGCCCCGACCGACTCTCACCTGTGTCTCCTACCGAAGCCAGCACCGGGCTGGGCACATAGCACATAAACGTCGGCCGAAAGCCGAAGAGATGGGGGTGCAGGTCCCCGCCATGGGGGCGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085767_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGAAAGGGCCCAACATC
R:
CGCGCAGGGATGTGTAGTTTA
Band lengths:
254-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: