MmuEX0020824 @ mm10
Exon Skipping
Gene
ENSMUSG00000085767 | Gm13563
Description
predicted gene 13563 [Source:MGI Symbol;Acc:MGI:3652052]
Coordinates
chr2:26387598-26389018:+
Coord C1 exon
chr2:26387598-26387782
Coord A exon
chr2:26388242-26388392
Coord C2 exon
chr2:26388554-26389018
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTCTTGGTTTTTCAAGACAGGGT
3' ss Score
2.3
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GCTGAGGTTCTTGGTTTTCAAAAACTCTTTGAAGGAGAATGGATTGGCTTCTTCAAGGTCTTCAAGTTTGTCACCTGAAAAAACGAACACCACAGAAGACTGTGAAAGGGCCCAACATCCTGTGTTACCATCACGTTTCAACTGTAACTCAAAGAACATTACAGAACATGAGAGCTGCCAAAGAG
Seq A exon
GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGACCTCGAACTCAGAAATCCGCCTACCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCGGCTCCACTGCTCTTTTGGGCTCCAG
Seq C2 exon
CCAAAACCTGCAAAAAGACATGGTCAGCTCACCGTGATCACAGCAAGCCTTATGACTGCAGCGTTTGTCCAGGGAGGTGAAGACCGCAGACGCCTGACTCCCACTGAGTCTGGGACTAGAAAGCTGTCTTCTGAGGCTGGATGCGGTAAACTACACATCCCTGCGCGCTCTAAGAGCAGCTGCAGGTGGAACGCAGACCCGCTAGGTCCAGCCCCTGGCCTTGCCCAAGCCGGTGGGCTTAAGTGGCCTCCGAGCTCCACCAGGCACTACCTTCCTGCCTTGAGGCGGGCGGGCGGGCTGTGGGGAGGGCTCCCCGCGCTGCCCAGCTCCGCACTGTGGCCGGCGCCCCGACCGACTCTCACCTGTGTCTCCTACCGAAGCCAGCACCGGGCTGGGCACATAGCACATAAACGTCGGCCGAAAGCCGAAGAGATGGGGGTGCAGGTCCCCGCCATGGGGGCGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085767_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGAAAGGGCCCAACATC
R:
CGCGCAGGGATGTGTAGTTTA
Band lengths:
254-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types