MmuALTD1036216-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000085767 | Gm13563
Description
predicted gene 13563 [Source:MGI Symbol;Acc:MGI:3652052]
Coordinates
chr2:26387598-26389018:+
Coord C1 exon
chr2:26387598-26387782
Coord A exon
NA
Coord C2 exon
chr2:26388554-26389018
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
3' ss Seq
TACATTTCCCCTTTCCATAGCCA
3' ss Score
8.52
Exon sequences
Seq C1 exon
GCTGAGGTTCTTGGTTTTCAAAAACTCTTTGAAGGAGAATGGATTGGCTTCTTCAAGGTCTTCAAGTTTGTCACCTGAAAAAACGAACACCACAGAAGACTGTGAAAGGGCCCAACATCCTGTGTTACCATCACGTTTCAACTGTAACTCAAAGAACATTACAGAACATGAGAGCTGCCAAAGAG
Seq A exon
NA
Seq C2 exon
CCAAAACCTGCAAAAAGACATGGTCAGCTCACCGTGATCACAGCAAGCCTTATGACTGCAGCGTTTGTCCAGGGAGGTGAAGACCGCAGACGCCTGACTCCCACTGAGTCTGGGACTAGAAAGCTGTCTTCTGAGGCTGGATGCGGTAAACTACACATCCCTGCGCGCTCTAAGAGCAGCTGCAGGTGGAACGCAGACCCGCTAGGTCCAGCCCCTGGCCTTGCCCAAGCCGGTGGGCTTAAGTGGCCTCCGAGCTCCACCAGGCACTACCTTCCTGCCTTGAGGCGGGCGGGCGGGCTGTGGGGAGGGCTCCCCGCGCTGCCCAGCTCCGCACTGTGGCCGGCGCCCCGACCGACTCTCACCTGTGTCTCCTACCGAAGCCAGCACCGGGCTGGGCACATAGCACATAAACGTCGGCCGAAAGCCGAAGAGATGGGGGTGCAGGTCCCCGCCATGGGGGCGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085767-13-24,15-24-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGAAAGGGCCCAACATC
R:
CGCGCAGGGATGTGTAGTTTA
Band lengths:
254-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types