MmuEX0034737 @ mm9
Exon Skipping
Gene
ENSMUSG00000026873 | Phf19
Description
PHD finger protein 19 [Source:MGI Symbol;Acc:MGI:1921266]
Coordinates
chr2:34760970-34766765:-
Coord C1 exon
chr2:34766684-34766765
Coord A exon
chr2:34762525-34762620
Coord C2 exon
chr2:34760970-34761118
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGAGGGGACTTCTTTTTCAGCTG
3' ss Score
5.94
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTCAGCAGTCCTAAGCAAAGCTGCCTTGTGACTTTTGAAGATAATTCCAAATACTGGGTCCTGTGGAAGGACATCCAGCATG
Seq A exon
CTGGTGTTCCGGGAGAGGAGCCCAAGTGTGACGTCTGCATGGGGAAGACTTCAGGGCCTATGAACGAGATCCTCATCTGTGGGAAGTGTGGCCTGG
Seq C2 exon
AAAGGTGGCGCTTTGAAGAAAGGCGCCATCGCCAAGACGCTGCAGGCAGTGAAAATGGTGCTGTCCTACCAGCCGGAGGAACTCGATTGGGACTCGCCCCATCGCACTAACCAGCAGCAATGCTACTGCTACTGCGGCGGGCCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026873_MULTIEX2-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(47.4=100),PF0013017=C1_1=PU(4.3=7.1)
A:
PF150571=DUF4537=PD(15.8=27.3),PF144461=Prok-RING_1=PU(71.8=84.8),PF0013017=C1_1=FE(69.6=100),PF0062824=PHD=PU(44.4=72.7)
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCAGTCCTAAGCAAAGCT
R:
AGTCCCAATCGAGTTCCTCCG
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types