DreEX6048578 @ danRer10
Exon Skipping
Gene
ENSDARG00000078050 | phf19
Description
PHD finger protein 19 [Source:ZFIN;Acc:ZDB-GENE-081105-128]
Coordinates
chr8:12353108-12356730:-
Coord C1 exon
chr8:12356649-12356730
Coord A exon
chr8:12354906-12355001
Coord C2 exon
chr8:12353108-12353202
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCTCTTTCGCACAGCTG
3' ss Score
8.88
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGAGCACCTCAAAACAGAGCTGCTTTGTGTCGTTTGAAGACAACTCCAAGTTCTGGGTGCTTTGGAAAGACATACAACATG
Seq A exon
CTGGAATCCCAGGGGAAGAACCCAAATGCTCAGTGTGTTCTGACATGTCTCTGGATCCTGGTAATGAAATTCTTATCTGCGGAAAGTGTGGAGTAG
Seq C2 exon
GCTTTCATCAGCTCTGCCACTTGCCCACGGTGGAGAGCTCAGCTGACCCATCGCCTTGGTTCTGCAGAAGGTGCATTTTTGCCTTGGCTGTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078050-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF144461=Prok-RING_1=PU(66.7=84.8),PF0062824=PHD=PU(46.2=72.7)
C2:
PF144461=Prok-RING_1=PD(31.0=40.6),PF0062824=PHD=PD(51.9=84.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCTCAAAACAGAGCTGC
R:
GCCAAGGCAAAAATGCACCTT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]