BtaEX6036247 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112155296-112159136:-
Coord C1 exon
chr8:112159055-112159136
Coord A exon
chr8:112155846-112155941
Coord C2 exon
chr8:112155296-112155396
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCAGGGTGCCTTTCTTCCAGCTG
3' ss Score
5.81
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTCAGCAGTTCTAAGCAGAGCTGCCTCGTAACTTTTGAAGATAATTCCAAATACTGGGTCTTATGGAAGGACATACAGCATG
Seq A exon
CTGGTGTTCCAGGGGAGGAGCCCAAGTGCAACATCTGCCTGGGGAAGACATCAGGGCCCCTGAACGAGATCCTCATCTGTGGGAAGTGCGGCCTGG
Seq C2 exon
GTTACCACCAGCAGTGCCACATCCCCATAGCGGGCAGTGCCGACCGGCCCCTGCTCACACCTTGGTTCTGCCGACGCTGCATCTTCGCGCTGGCTGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(46.6=100)
A:
PF150571=DUF4537=PD(17.2=30.3),PF144461=Prok-RING_1=PU(66.7=84.8),PF0062824=PHD=PU(44.4=72.7)
C2:
PF144461=Prok-RING_1=PD(31.0=38.2),PF0062824=PHD=PD(53.7=85.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCAGTTCTAAGCAGAGCT
R:
AAGATGCAGCGTCGGCAGAA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]