MmuEX0034738 @ mm9
Exon Skipping
Gene
ENSMUSG00000026873 | Phf19
Description
PHD finger protein 19 [Source:MGI Symbol;Acc:MGI:1921266]
Coordinates
chr2:34760970-34762620:-
Coord C1 exon
chr2:34762525-34762620
Coord A exon
chr2:34761978-34762078
Coord C2 exon
chr2:34760970-34761118
Length
101 bp
Sequences
Splice sites
3' ss Seq
AATCCCCACCTTCACCCCAGGTT
3' ss Score
7.51
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CTGGTGTTCCGGGAGAGGAGCCCAAGTGTGACGTCTGCATGGGGAAGACTTCAGGGCCTATGAACGAGATCCTCATCTGTGGGAAGTGTGGCCTGG
Seq A exon
GTTACCACCAACAGTGCCACATCCCCATCGCAGTTGATGCCAACTGGCCCCTCCTCACTCATTGGTTCTGCCGACGCTGCATTTTCGCACTGGCTGTGAGG
Seq C2 exon
AAAGGTGGCGCTTTGAAGAAAGGCGCCATCGCCAAGACGCTGCAGGCAGTGAAAATGGTGCTGTCCTACCAGCCGGAGGAACTCGATTGGGACTCGCCCCATCGCACTAACCAGCAGCAATGCTACTGCTACTGCGGCGGGCCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026873_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PD(15.8=27.3),PF144461=Prok-RING_1=PU(71.8=84.8),PF0013017=C1_1=FE(69.6=100),PF0062824=PHD=PU(44.4=72.7)
A:
PF144461=Prok-RING_1=PD(25.6=29.4),PF0013017=C1_1=PD(23.9=32.4),PF0062824=PHD=PD(53.7=85.3)
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGTTCCGGGAGAGGAG
R:
GCCGCAGTAGCAGTAGCATTG
Band lengths:
234-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types