BtaEX6036248 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112154617-112155941:-
Coord C1 exon
chr8:112155846-112155941
Coord A exon
chr8:112155296-112155396
Coord C2 exon
chr8:112154617-112154765
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTGCCCCGCTCCTAGGTT
3' ss Score
8.76
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
CTGGTGTTCCAGGGGAGGAGCCCAAGTGCAACATCTGCCTGGGGAAGACATCAGGGCCCCTGAACGAGATCCTCATCTGTGGGAAGTGCGGCCTGG
Seq A exon
GTTACCACCAGCAGTGCCACATCCCCATAGCGGGCAGTGCCGACCGGCCCCTGCTCACACCTTGGTTCTGCCGACGCTGCATCTTCGCGCTGGCTGTGCGG
Seq C2 exon
AAAGGCGGCGCGCTGAAGAAGGGCGCCATCGCCAGGACGCTGCAGGCCGTGAAGATGGTGCTGTCCTACCAGCCCGAGGAGCTCGAGTGGGACTCCCCCCACCGCACCAACCAGCAGCAGTGCTACTGCTACTGCGGCGGTCCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PD(17.2=30.3),PF144461=Prok-RING_1=PU(66.7=84.8),PF0062824=PHD=PU(44.4=72.7)
A:
PF144461=Prok-RING_1=PD(31.0=38.2),PF0062824=PHD=PD(53.7=85.3)
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTTCCAGGGGAGGAG
R:
GACCGCCGCAGTAGCAGTAG
Band lengths:
237-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]