DreEX6048579 @ danRer10
Exon Skipping
Gene
ENSDARG00000078050 | phf19
Description
PHD finger protein 19 [Source:ZFIN;Acc:ZDB-GENE-081105-128]
Coordinates
chr8:12350155-12355001:-
Coord C1 exon
chr8:12354906-12355001
Coord A exon
chr8:12353108-12353202
Coord C2 exon
chr8:12350155-12350303
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGCTTGTCTTGCATCTTCAGGCT
3' ss Score
8.8
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CTGGAATCCCAGGGGAAGAACCCAAATGCTCAGTGTGTTCTGACATGTCTCTGGATCCTGGTAATGAAATTCTTATCTGCGGAAAGTGTGGAGTAG
Seq A exon
GCTTTCATCAGCTCTGCCACTTGCCCACGGTGGAGAGCTCAGCTGACCCATCGCCTTGGTTCTGCAGAAGGTGCATTTTTGCCTTGGCTGTGAGA
Seq C2 exon
AAAGGGGGAGCTTTGAAGAAAGGGCAGCTGGCCAAAGATCTGCAGGCCATGAAGCAGGTGCTGACCTATAATCCAGAGGAGCTCGAGTGGGACTCTTTGCACCGCACAAACCATCAGCAGTGCTATTGCTATTGCGGAGGACCTGGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078050-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF144461=Prok-RING_1=PU(66.7=84.8),PF0062824=PHD=PU(46.2=72.7)
A:
PF144461=Prok-RING_1=PD(31.0=40.6),PF0062824=PHD=PD(51.9=84.4)
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATGTCTCTGGATCCTGGT
R:
GTTTGTGCGGTGCAAAGAGTC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]