MmuINT0146116 @ mm9
Intron Retention
Gene
ENSMUSG00000036067 | Slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Coordinates
chr2:26882661-26883518:-
Coord C1 exon
chr2:26883337-26883518
Coord A exon
chr2:26882824-26883336
Coord C2 exon
chr2:26882661-26882823
Length
513 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
TCTACCCCATCCCCCACCAGGGC
3' ss Score
8.9
Exon sequences
Seq C1 exon
GTAGGGCGGAGCTTCGCCTGCTGTGCTGAGGGCTCAGGCAGATGCTTTAGCTCTGCAGTGGAGTCCCGCTGTATCTGACCATCCGCGCTGGCCATGCAGGAACCCCTGCTAAGAACCGAGGGACTCGACTATGATACCTTCCCCGAGGTGCCCGCGACTCCTGGAGAGAGAGAACGAGCCGG
Seq A exon
GTGAGAGTCTCAGGGTGTGGGCATGGGAGGTTGGGATGGCCTTATCTCCAGCAGACGATACACATCTTGGGCCATTACTGACTTCTGGTGAGTGGCCACCAAGAGTCATCTGACTCTTTCTTACCGCATGCTCGCAAGTCCTATTTAAAGAACTGGACCACCATAAAGAAGAGAGCCTCCAAAGGAATACTGGGTGGGATCCCCACCTGCCACAGGGGGAGGACATGGGTCTTGCCTAAGATCACAGAACAAGCTTTGAGCATCACAACAGGAGGCAAAAACCACAATTTCTTTTCTGGAGAAAACGGGCACCAGCCCCAGCCGACAGCCTGGGGATTTCCCAGAGCTGCTGCTAAGGCCTGAAGACAACTTGACTGGCCCTGGACCCAGGCCTCTCCTGGTTATCTGCCGAGCTGGATGGTCATGGGCTCGGGGAAGGCAGCAGTCTGGGAACTCAGGGTCCATTTAAAGGACTTGTCCTTGGTCCTTTGGTTCTACCCCATCCCCCACCAG
Seq C2 exon
GGCCTTGAAAAACAGAAGGGTGTTCCTGGCTACCTTCGCCGCTGTGCTGGGCAATTTCAGCTTTGGGTATGCCTTGGTCTACACATCTCCAGTCATCCCTGAACTGAAGCTCTCTTCTGACCCAGCACTACACCTGGACAAAATCCAGGCATCCTGGTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036067-Slc2a6:NM_172659:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008319=Sugar_tr=PU(10.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTTCGCCTGCTGTG
R:
TTTTGTCCAGGTGTAGTGCTGG
Band lengths:
318-831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: