RnoINT0137460 @ rn6
Intron Retention
Gene
ENSRNOG00000005900 | Slc2a6
Description
solute carrier family 2 member 6 [Source:RGD Symbol;Acc:1309317]
Coordinates
chr3:5574283-5575136:-
Coord C1 exon
chr3:5574962-5575136
Coord A exon
chr3:5574446-5574961
Coord C2 exon
chr3:5574283-5574445
Length
516 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
TACACACCATTTCCCACCAGGGC
3' ss Score
7.5
Exon sequences
Seq C1 exon
GGAGCTTCGCCTGCCGCTCGAGGAGCTCGGGCGGATGCTTTAGCGCTGCGGTGGAGTCCAGCTGTATCTGACCATCTGTGCTGGCCATGCAGGAGCCCCTGCTAAGAGCCGAGGGACTGGACTATGACACCTTCCCCGAGGCGCCCGCGTCGCCTGAAGAGAAGGCACGGGCCGG
Seq A exon
GTGAGAGTCTCAGGGTGTGGGGGTAGGAGGGTGGGATGGCCTTATCTCCAGGCAGACGGCACATTATCTCGGGCCCGCTACTGACTTCTGGTGAGTGGCCACCAAGAGTCATCTGACTCTTACCGCATGCTCCCAAGTCCCATCTATTTAAAGAATTGGACCACCAAAGAGAAGAGAGCCTCCAAAGGAATACTGGGTGGGGTCCCCACCTGTCACAGATAGGGAGAGGACAAGGGTCTTGCCTAAGATCACAGAACAAGCTTTGAGCATCATAACAGGAGGCAAAACTCACAGTTTTATTTTTTTCTGAAGAAAAAGGGGCCCTAGTCCCAGTTGACAGCCTGGGAATTTCACAGAGCTGCTCAGTTACAATTTGACCAGCCCTGGACCCAGGCCTCTCCCGGCTGTCTGCTGAGCTGAATGGCCATGGGCTCAGGGAAGGCAGCAATCTGGGAAACCAGGATCCATTTAAAGGACTTGACCTTGGTCCTTTGGTTACACACCATTTCCCACCAG
Seq C2 exon
GGCCTTGCAAAACAGAAGGGTGTTCCTGGCCACCTTCGCTGCCGTGCTGGGCAATTTCAGCTTTGGGTATGCCCTGGTCTACACATCTCCAGTCATCCCTGCGCTGAAGCGCTCTTCTGACCCAGCACTACGCCTGGACAAAATCCAGGCATCCTGGTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005900:ENSRNOT00000008034:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCTCGGGCGGATG
R:
GGATTTTGTCCAGGCGTAGTG
Band lengths:
302-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]