HsaINT0152343 @ hg38
Intron Retention
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr9:133478254-133479137:-
Coord C1 exon
chr9:133478968-133479137
Coord A exon
chr9:133478417-133478967
Coord C2 exon
chr9:133478254-133478416
Length
551 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
TTGTCCGCCACCATCACCAGGAC
3' ss Score
6.54
Exon sequences
Seq C1 exon
CGGTGCCCTCGGAGCTGCTGGCCCCGGGCGGCTGCTCCAGTCTGAGCGCCCTCCGCTCGCCCCGAGAGAGACCCGGCCATGCAGGAGCCGCTGCTGGGAGCCGAGGGCCCGGACTACGACACCTTCCCCGAGAAGCCGCCCCCGTCGCCAGGGGACAGGGCGCGGGTCGG
Seq A exon
GTGAGAGTCGCTAGGTTGGGGGCTGCGGGTGGGGCCTGGGGGTGGCCCTGGTTCCCTCCAGCCGGCGGCAGGCTCCCGCCCTGGGCCTCCCCTGACCTAGTCGCCACCGAGGGGCCATCTGGCTCCCTCCTGTCCCAGACACGCTACTCCTATTTAAGGAACTGGTCCCCCTAAGGGAAGGAACGATCCACGAGAGTACCGGGCCCAGCCCCCCACTGCCACAGACAGTGAGACTGAGGCCCCAGCGAGCAGGGGTTCTGCCTGAGGTCACACAGCAAGCCTCCAGCCGCCGCCCTGGGGGCAGAACCAGAGCCTCCTCTTCCGGAGAAAAGGCCCCAGCACCAGAGGCTCAGCCACTGCGGATGAGCTAACAATGGCCTGGGAATTTCCCAGGGGAGCTGGGGCTCAGGCCCTGGGAACGTGAATGGCCTTGGACCCAGGCCTCCCTAGCACTGCCCGCTGAGCCGGGCAGCCACTGGGTTCAGAAAAGGCAATGGTCCCTGGAGGAGGGACTCAGAGACCCTGGTCTTTTTGTCCGCCACCATCACCAG
Seq C2 exon
GACCCTGCAGAACAAAAGGGTGTTCCTGGCCACCTTCGCCGCAGTGCTCGGCAATTTCAGCTTTGGGTATGCCCTGGTCTACACATCCCCTGTCATCCCAGCCCTGGAGCGCTCCTTGGATCCTGACCTGCATCTGACCAAATCCCAGGCATCCTGGTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326:ENST00000371899:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008319=Sugar_tr=PU(14.7=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCTGCTCCAGTCTGA
R:
GGATGCCTGGGATTTGGTCAG
Band lengths:
297-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains