MmuEX0043037 @ mm9
Exon Skipping
Gene
ENSMUSG00000036067 | Slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Coordinates
chr2:26881421-26883518:-
Coord C1 exon
chr2:26883337-26883518
Coord A exon
chr2:26882661-26882823
Coord C2 exon
chr2:26881421-26881627
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCTACCCCATCCCCCACCAGGGC
3' ss Score
8.9
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
GTAGGGCGGAGCTTCGCCTGCTGTGCTGAGGGCTCAGGCAGATGCTTTAGCTCTGCAGTGGAGTCCCGCTGTATCTGACCATCCGCGCTGGCCATGCAGGAACCCCTGCTAAGAACCGAGGGACTCGACTATGATACCTTCCCCGAGGTGCCCGCGACTCCTGGAGAGAGAGAACGAGCCGG
Seq A exon
GGCCTTGAAAAACAGAAGGGTGTTCCTGGCTACCTTCGCCGCTGTGCTGGGCAATTTCAGCTTTGGGTATGCCTTGGTCTACACATCTCCAGTCATCCCTGAACTGAAGCTCTCTTCTGACCCAGCACTACACCTGGACAAAATCCAGGCATCCTGGTTTGGG
Seq C2 exon
TCCGTGTTCACCTTGGGTGCCGCAGCAGGGGGCCTCAGTGCTATGTTACTCAATGACCTCCTGGGCCGGAAGCTCAGCATCATGTTCTCAGCTGTCCCCTCAGCCATTGGCTATGCAATCATGGCCGGTGCCCGTGGCCTCTGGATGCTTCTGTTGGGGAGGATGCTGACGGGCTTTGCCGGGGGACTCACTGCTGCCTGCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036067_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008319=Sugar_tr=FE(15.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCAGGCAGATGCTTTAG
R:
AGGGGACAGCTGAGAACATGA
Band lengths:
253-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: