GgaEX1053247 @ galGal4
Exon Skipping
Gene
ENSGALG00000002982 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr17:6939624-6940561:-
Coord C1 exon
chr17:6940461-6940561
Coord A exon
chr17:6939911-6940073
Coord C2 exon
chr17:6939624-6939830
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTTGCTCTGCCCACCTCCAGGAG
3' ss Score
9.84
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
ATGGAGCCGAGCGTGCGGGAGCCGTTGGTGAGGAGGTCAAGCTCCTCATACCACACCTTCCCTGAGAGCATCCGGAGGGGGCTGGACAAGGAGTACCTGCA
Seq A exon
GAGCCTCAACAACAAGCGGCTCTACATGGCAGTGTTTGCTGCCGTGCTGGGGAACTTCAGCTTTGGCTTTGCCCTGGTTTACCCCTCACCCGTGATCCCTGCCCTGGAGACTCACCCCAACCCCGCGCTGAGGCTGGACCGCTACAGAGCATCCTGGTTTGGG
Seq C2 exon
TCTGTGTTCATGCTGGGGGCGGCGGCGGGGGGGCTCAGCACCATGCTTCTCAATGACCACCTGGGCCGCAAGCTCAGCATCATGTTCTCAGCCGTGCCCTCCGCCGTGGGATATGCGCTGATGGCCAGCGCCCAGGGCATCGAGATGCTGCTGCTGGGCCGCGTGCTTACGGGCTACACCGGTGGCGTGACGTCTGCCTCCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002982-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(9.9=81.8)
C2:
PF0008319=Sugar_tr=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACCACACCTTCCCTGAGAGC
R:
GATGGAGGCAGACGTCACG
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]