DreEX6048596 @ danRer10
Exon Skipping
Gene
ENSDARG00000058731 | slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:ZFIN;Acc:ZDB-GENE-081104-301]
Coordinates
chr8:12825942-12829697:-
Coord C1 exon
chr8:12829540-12829697
Coord A exon
chr8:12829280-12829433
Coord C2 exon
chr8:12825942-12826148
Length
154 bp
Sequences
Splice sites
3' ss Seq
GTGCTCCTGTACTTTTCCAGTCA
3' ss Score
7.84
5' ss Seq
GGTGTAAGA
5' ss Score
3.6
Exon sequences
Seq C1 exon
TCCCAGTATTGCAAAAATGGAGTTTTACTTTCACTTGCTCTCATTTATACTCGTTCGTGCTTCCAAGTCATTCAGTCTGCAGGGTAAGACGGAGGAGAGATGGCAGACCGTTCGGATGAAGCGACCCCGTTAATTAACAACTCACCACCCCGGATAAG
Seq A exon
TCATGGAAAGCTCTACCTTGCGGTGTTTTCAGCGGTCCTGGGCAATTTCAATTTCGGATTTGCTTTAGTGTTCCCTTCCCCTGTCATCCCTCAGCTTAAACAAGGAGATGACACTCGGCTGCAAATGAACGTCCATCAGATATCATGGTTTGGT
Seq C2 exon
TCAATTTTCACTCTTGGAGCGGCTGCAGGGGGTCTCAGTGCCATGTTTCTGAATGACCGAGTCGGAAGAAAAATAAGCATCATGATATCAGGATTACCGTCTGTTCTTGGTCTCCTTGTGATGGGATCTGCACAAAACTTCTGGATGTTGTTATGGGGCAGATTTCTGACTGGTATCGCTGGTGGCATCACTGCGGGCTCCATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058731-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(9.9=86.5)
C2:
PF0008319=Sugar_tr=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACGGAGGAGAGATGGCAG
R:
ACCAGTCAGAAATCTGCCCCA
Band lengths:
247-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]