DmeEX6010048 @ dm6
Exon Skipping
Gene
FBgn0050035 | Tret1-1
Description
The gene Trehalose transporter 1-1 is referred to in FlyBase by the symbol DmelTret1-1 (CG30035, FBgn0050035). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 2R:11665768..11674782. Its molecular function is described by: carbohydrate:proton symporter activity; trehalose transmembrane transporter activity. It is involved in the biological process described with: glucose import; trehalose transport. 16 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: viable; lethal; flightless. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed during late pupal stages.
Coordinates
chr2R:11672056-11673830:+
Coord C1 exon
chr2R:11672056-11672298
Coord A exon
chr2R:11672717-11672842
Coord C2 exon
chr2R:11673045-11673830
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCTTCCTATTTCCAGGTC
3' ss Score
11.37
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTCAGTTGAGTTTTGACGAGCGAACGCGCCAAACGTATTCCATTTCCAAGGAGCAAAGTGAAAGGCAGGAAGCTAACGCTGTATTAGCTACATTCGCCGCTTCGTTGCAAGCCAAAAACGATTTCAGTTCGTGATTCAGTTTAAAGATACAGCACCGCGATGAAGATCCTGATGCGAGCGGACACCCATGTGTCCTTCTCCGTGCCCGTCGAGGAGCCCAAGGCCATTTGTACCTTCTCCCAG
Seq A exon
GTCTTGGCTGCTCTGAGTGTCTCGCTGGGCTCCCTAGTGGTCGGATTTGTCAGCGCTTACACGTCGCCTGCTCTTGTGTCGATGACCGATCGGAATATCACCTCGTTTGAGGTCACCCAAGATGCT
Seq C2 exon
GGTTCTTGGGTTGGTGGCATCATGCCGCTGGCTGGATTGGCAGGTGGCATAGCCGGAGGACCCTTGATCGAATATCTGGGCAGGCGCAACACCATCCTGGCCACTGCGGTGCCCTTCATTGTCTCATCACTACTGATTGCCTGTGCTGTGAATGTGGCTATGGTTCTGTGCGGACGATTCCTGGCTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGTCTACCTGGGTGAAACTGTGCAGCCTGAGGTGCGAGGCACTTTGGGTTTGCTGCCCACGGCCTTTGGTAACATAGGCATCCTGCTCTGCTTCGTGGCGGGATCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGTTCCCTTCCTGATTTTAATGTTCCTTATTCCGGAAACTCCGCGCTGGTTTGTGGGCCGTGGTCTGGAGGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGTGGCAAGGAGGCTGATGTGGAGCCCGA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0050035-'8-7,'8-6,9-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(8.9=92.9)
C2:
PF0008319=Sugar_tr=FE(59.5=100)
Main Inclusion Isoform:
FBpp0087179
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0087178
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGCTACATTCGCCGCTTCG
R:
CGCCTGCCCAGATATTCGATC
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)