BtaEX0033042 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006957 | SLC2A8
Description
Bos taurus solute carrier family 2 (facilitated glucose transporter), member 8 (SLC2A8), mRNA. [Source:RefSeq mRNA;Acc:NM_201528]
Coordinates
chr11:98161639-98162508:+
Coord C1 exon
chr11:98161639-98161789
Coord A exon
chr11:98161885-98162047
Coord C2 exon
chr11:98162302-98162508
Length
163 bp
Sequences
Splice sites
3' ss Seq
GACCGCCCCTGTCTCCGCAGCGC
3' ss Score
11.16
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
GGTTGCCCTGGCTGAAACGCCGGTGCTGGCCGCACTCGCGGGACCCGTGGCAGTTCAAGGCGTCAGAGCCCTAAAAGCAAGCGTTGATCGCGGACATGACGCCTGAGGACCAAGAGGAGACCCAGCCGCTCCTACGGCCGCCCGGCGGCAG
Seq A exon
CGCTCCCCGCGGCCGCCGCGTCTTCCTCGCTGCCTTCGCCGCTGCCCTGGGACCGCTCAGCTTCGGCTTCGCCCTCGGCTACAGCTCCCCGGCCATCCCGAGCCTGAGGCGCGCCGCGCCCCCGGCCCCGCACCTCGACGAAGACGCAGCCTCCTGGTTCGGG
Seq C2 exon
GCCATCGTGACCCTGGGCGCCGCGGCCGGGGGCGTGCTGGGCGGCTGGCTCCTGGACCGCGCGGGGCGCAAGCTGAGCCTAGTCCTCTGCGCCTTGCCCTTCGTGGCCGGCTTCGCCGTCATCACCGCGGCTCAGAACCTGTGGATGCTGCTCGGAGGCCGCCTGCTCACCGGCCTGGCCTGCGGCATTGCCTCGCTCGTGGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006957-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(9.8=80.0)
C2:
PF0008319=Sugar_tr=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGCCCTAAAAGCAAGCG
R:
GAGCAGCATCCACAGGTTCTG
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development