MmuEX0043045 @ mm9
Exon Skipping
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32836881-32837602:-
Coord C1 exon
chr2:32837478-32837602
Coord A exon
chr2:32837241-32837403
Coord C2 exon
chr2:32836881-32837087
Length
163 bp
Sequences
Splice sites
3' ss Seq
GCCCCGCCTTGTACCCGTAGGAC
3' ss Score
10.62
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
TTGGTCACTCCTGCAGCGGAGGCCGCGCTCGCCCGAGCGGCGACAGTTCGCGGGTCAGGTCCTGCTGACATGTCTCCCGAGGACCCCCAGGAGACGCAGCCGCTATTGCGGCCACCGGAAGCCAG
Seq A exon
GACTCCCCGCGGCCGCCGGGTCTTCCTCGCTTCCTTCGCCGCCGCTCTGGGACCCCTCAGCTTCGGCTTCGCGCTCGGCTACAGCTCCCCCGCCATCCCCAGCCTGCGGCGCACCGCACCCCCGGCCCTGCGCCTCGGAGACAATGCGGCCTCCTGGTTCGGG
Seq C2 exon
GCCGTCGTGACCCTGGGCGCTGCTGCAGGGGGCATACTGGGCGGCTGGCTCCTGGACCGTGCAGGGCGCAAGCTGAGCCTCTTGCTCTGCACCGTGCCCTTCGTGACTGGCTTTGCTGTCATCACCGCGGCCCGGGATGTGTGGATGCTGCTCGGAGGCCGCCTCCTCACCGGCCTTGCCTGCGGAGTCGCCTCACTAGTGGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(16.5=80.0)
C2:
PF0008319=Sugar_tr=FE(15.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCCTGCAGCGGAGG
R:
GGTGATGACAGCAAAGCCAGT
Band lengths:
247-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: