MmuALTA0016624-2/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32837006-32837403:-
Coord C1 exon
chr2:32837241-32837403
Coord A exon
chr2:32837060-32837087
Coord C2 exon
chr2:32837006-32837059
Length
28 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
AGCCCGTCCCGGGTCCCCAGGCC
3' ss Score
7.09
Exon sequences
Seq C1 exon
GACTCCCCGCGGCCGCCGGGTCTTCCTCGCTTCCTTCGCCGCCGCTCTGGGACCCCTCAGCTTCGGCTTCGCGCTCGGCTACAGCTCCCCCGCCATCCCCAGCCTGCGGCGCACCGCACCCCCGGCCCTGCGCCTCGGAGACAATGCGGCCTCCTGGTTCGGG
Seq A exon
GCCGTCGTGACCCTGGGCGCTGCTGCAG
Seq C2 exon
GGGGCATACTGGGCGGCTGGCTCCTGGACCGTGCAGGGCGCAAGCTGAGCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791-1-3,1-2,1-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(16.5=80.0)
A:
NA
C2:
PF0008319=Sugar_tr=FE(15.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGCGCTCGGCTACAG
R:
GAGCCAGCCGCCCAGTAT
Band lengths:
120-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: