MmuEX0043046 @ mm9
Exon Skipping
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32831657-32837602:-
Coord C1 exon
chr2:32837478-32837602
Coord A exon
chr2:32836881-32837087
Coord C2 exon
chr2:32831657-32831800
Length
207 bp
Sequences
Splice sites
3' ss Seq
AGCCCGTCCCGGGTCCCCAGGCC
3' ss Score
7.09
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
TTGGTCACTCCTGCAGCGGAGGCCGCGCTCGCCCGAGCGGCGACAGTTCGCGGGTCAGGTCCTGCTGACATGTCTCCCGAGGACCCCCAGGAGACGCAGCCGCTATTGCGGCCACCGGAAGCCAG
Seq A exon
GCCGTCGTGACCCTGGGCGCTGCTGCAGGGGGCATACTGGGCGGCTGGCTCCTGGACCGTGCAGGGCGCAAGCTGAGCCTCTTGCTCTGCACCGTGCCCTTCGTGACTGGCTTTGCTGTCATCACCGCGGCCCGGGATGTGTGGATGCTGCTCGGAGGCCGCCTCCTCACCGGCCTTGCCTGCGGAGTCGCCTCACTAGTGGCACCG
Seq C2 exon
GGCTTCCAGCTGGCCCTGCTGAGGCGCCCTGGCATCTACAAGCCCCTCATCATCGGCATTTCCCTCATGGTCTTCCAGCAGCTGTCAGGGGTCAATGCTATCATGTTCTATGCCAACAGCATCTTCGAGGAGGCCAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791_MULTIEX2-2/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=FE(15.2=100)
C2:
PF0008319=Sugar_tr=FE(10.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTCACTCCTGCAGCGG
R:
TTGAACTTGGCCTCCTCGAAG
Band lengths:
268-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: