GgaEX1053248 @ galGal3
Exon Skipping
Gene
ENSGALG00000002982 | F1NAR8_CHICK
Description
NA
Coordinates
chr17:7611377-7612499:-
Coord C1 exon
chr17:7612337-7612499
Coord A exon
chr17:7612050-7612256
Coord C2 exon
chr17:7611377-7611476
Length
207 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGTGTCTCCCCGCAGTCT
3' ss Score
13.33
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
GAGCCTCAACAACAAGCGGCTCTACATGGCAGTGTTTGCTGCCGTGCTGGGGAACTTCAGCTTTGGCTTTGCCCTGGTTTACCCCTCACCCGTGATCCCTGCCCTGGAGACTCACCCCAACCCCGCGCTGAGGCTGGACCGCTACAGAGCATCCTGGTTTGGG
Seq A exon
TCTGTGTTCATGCTGGGGGCGGCGGCGGGGGGGCTCAGCACCATGCTTCTCAATGACCACCTGGGCCGCAAGCTCAGCATCATGTTCTCAGCCGTGCCCTCCGCCGTGGGATATGCGCTGATGGCCAGCGCCCAGGGCATCGAGATGCTGCTGCTGGGCCGCGTGCTTACGGGCTACGCCGGTGGCGTGACGTCTGCCTCCATCCCG
Seq C2 exon
GTCTACATCTCTGAGATCTCCCACCCTGGGGTGCGAGGCATGCTGGGCACGTGTCCTCAGATCATGGCAGTGCTGGGCTCCCTCATCCTCTACGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002982-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
67%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(10.9=81.8)
A:
PF0008319=Sugar_tr=FE(16.5=100)
C2:
PF0008319=Sugar_tr=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAACAACAAGCGGCTCTA
R:
CCAGCACGTAGAGGATGAGGG
Band lengths:
260-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]