BtaEX6047331 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001824 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr11:104422031-104424166:-
Coord C1 exon
chr11:104424004-104424166
Coord A exon
chr11:104422751-104422957
Coord C2 exon
chr11:104422031-104422130
Length
207 bp
Sequences
Splice sites
3' ss Seq
CCCCGCACCCTCCTCTGCAGTCC
3' ss Score
6.95
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGTCCTGCAGAACAAGAGAGTGTTCCTGGCTACCTTCGCTGCTGTGCTGGGCAATTTCAGCTTCGGGTATGCCCTGGTCTACACGTCCCCCGTCATCCCCGCCCTGGAGCACTCCTCGGATCCAAACCTGAATCTGACCAAAACCCAGGCATCCTGGTTCGGG
Seq A exon
TCCGTGTTCACCCTGGGTGCGGCGGCCGGGGGACTCAGTGCCATGGTCCTCAATGACCTCCTGGGCCGGAAACTCAGCATCATGTTCTCAGCTGTGCCCTCGGCAGCCGGCTATGCGCTGATGGCAGGCGCCCACGGCCTCTGGATGCTGCTTCTGGGAAGGATGCTGACAGGCTTCGCAGGGGGGCTCACAGCTGCCTGCATCCCG
Seq C2 exon
GTGTACGTGTCTGAGATTGCCCCGCCCAGCGTTCGCGGGGCCCTGGGTGCCACACCCCAGCTCATGGCGGTGTTCGGGTCACTATCCCTCTATGCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001824-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(9.8=81.8)
A:
PF0008319=Sugar_tr=FE(14.8=100)
C2:
PF0008319=Sugar_tr=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTGCAGAACAAGAGAGTG
R:
AGGGCATAGAGGGATAGTGACC
Band lengths:
261-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]