Special

MmuEX0043038 @ mm10

Exon Skipping

Gene
ENSMUSG00000036067 | Slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Coordinates
chr2:27025223-27027303:-
Coord C1 exon
chr2:27027141-27027303
Coord A exon
chr2:27025901-27026107
Coord C2 exon
chr2:27025223-27025322
Length
207 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTTGTACCCCTGCAGTCC
3' ss Score
8.33
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GGCCTTGAAAAACAGAAGGGTGTTCCTGGCTACCTTCGCCGCTGTGCTGGGCAATTTCAGCTTTGGGTATGCCTTGGTCTACACATCTCCAGTCATCCCTGAACTGAAGCTCTCTTCTGACCCAGCACTACACCTGGACAAAATCCAGGCATCCTGGTTTGGG
Seq A exon
TCCGTGTTCACCTTGGGTGCCGCAGCAGGGGGCCTCAGTGCTATGTTACTCAATGACCTCCTGGGCCGGAAGCTCAGCATCATGTTCTCAGCTGTCCCCTCAGCCATTGGCTATGCAATCATGGCCGGTGCCCGTGGCCTCTGGATGCTTCTGTTGGGGAGGATGCTGACGGGCTTTGCCGGGGGACTCACTGCTGCCTGCATCCCG
Seq C2 exon
GTGTACGTGTCTGAGATTGCACCCCCTGATGTTCGTGGGGCCCTGGGGGCCACACCGCAGCTCATGGCCGTGTTTGGATCCCTGTCTCTCTACGCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036067-'1-6,'1-2,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0008319=Sugar_tr=PU(10.0=81.8)

							
A:
PF0008319=Sugar_tr=FE(15.1=100)

							
C2:
PF0008319=Sugar_tr=FE(10.9=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000049103





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000099954, ENSMUSP00000122054
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr9:133477035-133477241 
HIGH PSI
HsaEX6063754
(SLC2A6)
Human
(hg19)
chr9:136342157-136342363 
HIGH PSI
HsaEX6063754
(SLC2A6)
Rat
(rn6)
chr3:5573062-5573268 
HIGH PSI
RnoEX0082166
(Slc2a6)
Cow
(bosTau6)
chr11:104422751-104422957 
HIGH PSI
BtaEX6047331
(SLC2A6)
Chicken
(galGal4)
chr17:6939624-6939830 
HIGH PSI
GgaEX1053248
(SLC2A6)
Chicken
(galGal3)
chr17:7612050-7612256 
HIGH PSI
GgaEX1053248
(F1NAR8_CHICK)
Zebrafish
(danRer10)
chr8:12825942-12826148 
HIGH PSI
DreEX0072543
(slc2a6)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGCCTTGAAAAACAGAAGGGTG

				
R: 
GGGCGTAGAGAGACAGGGATC

				
Band lengths: 
260-467

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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