RnoEX0082166 @ rn6
Exon Skipping
Gene
ENSRNOG00000005900 | Slc2a6
Description
solute carrier family 2 member 6 [Source:RGD Symbol;Acc:1309317]
Coordinates
chr3:5572418-5574445:-
Coord C1 exon
chr3:5574283-5574445
Coord A exon
chr3:5573062-5573268
Coord C2 exon
chr3:5572418-5572521
Length
207 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTTGTACCCCTGCAGTCC
3' ss Score
8.68
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGCCTTGCAAAACAGAAGGGTGTTCCTGGCCACCTTCGCTGCCGTGCTGGGCAATTTCAGCTTTGGGTATGCCCTGGTCTACACATCTCCAGTCATCCCTGCGCTGAAGCGCTCTTCTGACCCAGCACTACGCCTGGACAAAATCCAGGCATCCTGGTTTGGG
Seq A exon
TCCGTGTTCACCCTGGGTGCCGCCGCTGGGGGCCTCAGTGCTATGCTACTCAATGACCTCTTGGGCCGGAAGCTCAGCATCATGTTTTCCGCTGTCCCCTCGGCCATTGGCTATGCACTCATGGCTGGTGCCCGTGGCCTCTGGATGCTTCTGCTGGGGAGGATGCTGACAGGCTTTGCCGGGGGACTCACTGCTGCCTGCATCCCG
Seq C2 exon
GTGTACGTGTCTGAGATTGCACCCCCGGGTGTTCGCGGGGCCCTGGGGGCCACGCCGCAGCTCATGGCCGTGTTTGGATCCCTGTCTCTCTATGCCCTTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005900-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGCAAAACAGAAGGGTG
R:
CAAGGGCATAGAGAGACAGGGA
Band lengths:
262-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]