GgaEX1053248 @ galGal4
Exon Skipping
Gene
ENSGALG00000002982 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr17:6938951-6940073:-
Coord C1 exon
chr17:6939911-6940073
Coord A exon
chr17:6939624-6939830
Coord C2 exon
chr17:6938951-6939050
Length
207 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGTGTCTCCCCGCAGTCT
3' ss Score
13.33
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
GAGCCTCAACAACAAGCGGCTCTACATGGCAGTGTTTGCTGCCGTGCTGGGGAACTTCAGCTTTGGCTTTGCCCTGGTTTACCCCTCACCCGTGATCCCTGCCCTGGAGACTCACCCCAACCCCGCGCTGAGGCTGGACCGCTACAGAGCATCCTGGTTTGGG
Seq A exon
TCTGTGTTCATGCTGGGGGCGGCGGCGGGGGGGCTCAGCACCATGCTTCTCAATGACCACCTGGGCCGCAAGCTCAGCATCATGTTCTCAGCCGTGCCCTCCGCCGTGGGATATGCGCTGATGGCCAGCGCCCAGGGCATCGAGATGCTGCTGCTGGGCCGCGTGCTTACGGGCTACACCGGTGGCGTGACGTCTGCCTCCATCCCG
Seq C2 exon
GTCTACATCTCTGAGATCTCCCACCCTGGGGTGCGAGGCATGCTGGGCACGTGTCCTCAGATCATGGCAGTGCTGGGCTCCCTCATCCTCTACGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002982-'1-3,'1-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(9.9=81.8)
A:
PF0008319=Sugar_tr=FE(14.9=100)
C2:
PF0008319=Sugar_tr=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAACAACAAGCGGCTCTA
R:
CCAGCACGTAGAGGATGAGGG
Band lengths:
260-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]