DreEX6014368 @ danRer10
Exon Skipping
Gene
ENSDARG00000104278 | slc2a8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-030829-25]
Coordinates
chr5:65293751-65297362:+
Coord C1 exon
chr5:65293751-65293913
Coord A exon
chr5:65294066-65294272
Coord C2 exon
chr5:65297263-65297362
Length
207 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTTCCTGTCTTACAGTCT
3' ss Score
9.45
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
TAAAGTTAAGAATGGAAAGCTGTTCATCGCCACCTTCGCAGCAGTTCTGGGACCGCTTAGTTTTGGGTTCGTGCTGGGCTACAGCTCTCCTGCTATCCCTGAACTCCGCAGAATCCAAGACCTGAGACTGCAGCTCAGCGTAGAGGAAGCTTCCTGGTTCGGG
Seq A exon
TCTGTGGTGACCATTGGTGCGGCTCTTGGGGGTCTTCTGGGAGGATGGATTGTGGAGAGGATCGGACGAAAGTTGAGCCTTATGTTCTGTGCAATACCATTCATCTTTGGGTTTACCACCATTATCGCTGCTCAGAACCACTGGATGTTCTATGTGGGCAGAGTGCTCACTGGTTTGGCCAGTGGAGTGACCTCTCTAGTTGTACCA
Seq C2 exon
CTTTACATCTCTGAAATGGCTCATGAGCGTGTTAGAGGAACTTTGGGATCCTGTGTGCAACTAATGGTTGTGATAGGCATTATGGGTGCTTATGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104278-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(9.9=81.8)
A:
PF0008319=Sugar_tr=FE(14.9=100)
C2:
PF0008319=Sugar_tr=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTAAGAATGGAAAGCTGTTCATCG
R:
CTGTTACATAAGCACCCATAATGCC
Band lengths:
260-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]