GgaEX0000860 @ galGal3
Exon Skipping
Gene
ENSGALG00000000853 | F1NDA6_CHICK
Description
NA
Coordinates
chr17:11114050-11118623:+
Coord C1 exon
chr17:11114050-11114209
Coord A exon
chr17:11115706-11115912
Coord C2 exon
chr17:11118524-11118623
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTTTAACTTGTTTTTTGAAGTCT
3' ss Score
4.98
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
AGTGCAAAACAAGAAGCTGTACCTGGCCACGTTCGCTGCTGTCCTGGGACCACTTAGCTTTGGCTTCGTGCTAGGCTATAGCTCACCTGCTATCCCAGAGCTGAGGAAAATCGACAATCCGAAATTACGATTGGACAGCAATCAGGCATCGTGGTTTGGG
Seq A exon
TCTATAGTAACATTAGGAGCTGCTGCTGGAGGAATACTGGGAGGCTACCTTGTGGATAAAATTGGGAGAAAACTGAGTCTGATGCTGTGTTCAATACCATTTGTCTCTGGATATATAGTTATTATTTCAGCTCAGAACGTCTGGATGCTTTATTTTGGACGAATACTAACTGGCTTAGCCAGTGGAATTACTTCACTTGTTGTTCCA
Seq C2 exon
GTATATATATCGGAAATATCTCATACAGATGTTCGTGGTATGCTTGGCTCTTTTGTCCAGTTGATGGTGGTGACTGGCATACTTGGAGCCTACATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853_MULTIEX1-1/6=C1-2
Average complexity
C1*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(10.0=83.3)
A:
PF0008319=Sugar_tr=FE(15.0=100)
C2:
PF0008319=Sugar_tr=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAAAACAAGAAGCTGTACC
R:
CTGCAATGTAGGCTCCAAGTA
Band lengths:
260-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]