GgaEX0000861 @ galGal3
Exon Skipping
Gene
ENSGALG00000000853 | F1NDA6_CHICK
Description
NA
Coordinates
chr17:11114050-11118991:+
Coord C1 exon
chr17:11114050-11114209
Coord A exon
chr17:11118524-11118623
Coord C2 exon
chr17:11118780-11118991
Length
100 bp
Sequences
Splice sites
3' ss Seq
ACATTTTCTCCCTGTTTTAGGTA
3' ss Score
13.47
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
AGTGCAAAACAAGAAGCTGTACCTGGCCACGTTCGCTGCTGTCCTGGGACCACTTAGCTTTGGCTTCGTGCTAGGCTATAGCTCACCTGCTATCCCAGAGCTGAGGAAAATCGACAATCCGAAATTACGATTGGACAGCAATCAGGCATCGTGGTTTGGG
Seq A exon
GTATATATATCGGAAATATCTCATACAGATGTTCGTGGTATGCTTGGCTCTTTTGTCCAGTTGATGGTGGTGACTGGCATACTTGGAGCCTACATTGCAG
Seq C2 exon
GATTGACACTAAAATGGCACTGGCTGGCAGTATTATGTTCTTTTCCACCATGCGTAATGCTTTTGTTTATGTTGTTCATGCCTGAAACACCGAGATTTCTGCTGGATCAGAAGAAACGTGCAGAAGCTATAGCTGCTTTACAGTTTCTGCGAGGACCATACGTGGACCATGAATGGGAATGCAGGCAAATTGAAGCTAATGTTGAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853_MULTIEX1-2/6=C1-3
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(10.0=83.3)
A:
PF0008319=Sugar_tr=FE(7.3=100)
C2:
PF0008319=Sugar_tr=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCTGCTATCCCAGAGCT
R:
ACGTATGGTCCTCGCAGAAAC
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]