RnoEX0082178 @ rn6
Exon Skipping
Gene
ENSRNOG00000022274 | Slc2a8
Description
solute carrier family 2 member 8 [Source:RGD Symbol;Acc:620611]
Coordinates
chr3:12023358-12029877:-
Coord C1 exon
chr3:12029793-12029877
Coord A exon
chr3:12028085-12028184
Coord C2 exon
chr3:12023358-12023501
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTAACCTTAACCACCAATAGGTC
3' ss Score
5.25
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
CGACAGTTCGCGGGTCAGACCCTGTTGACATGTCGCCCGAGGACCCCCAGGAAACACAGCCGCTGTTGCGGTCGCCGGGCGCCAG
Seq A exon
GTCTATATCTCGGAAATCGCCTACCCAGCCGTTCGAGGACTGCTCGGCTCCTGTGTGCAGCTGATGGTTGTCACTGGCATCCTCTTGGCCTACGTGGCAG
Seq C2 exon
GGCTTCCAGCTGGCTATGCTGAGGCGCCCTGGTGTCCACAAGCCCCTCATCATCGGCATTTGCCTCATGGTCTTCCAGCAGCTGTCAGGGGTCAACGCCATCATGTTCTATGCCAACACCATCTTTGAGGAGGCCAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022274_MULTIEX2-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=FE(7.4=100)
C2:
PF0008319=Sugar_tr=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTTCGCGGGTCAGAC
R:
TGAACTTGGCCTCCTCAAAGA
Band lengths:
226-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]