MmuEX0043047 @ mm10
Exon Skipping
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32976861-32981567:-
Coord C1 exon
chr2:32981361-32981567
Coord A exon
chr2:32980002-32980101
Coord C2 exon
chr2:32976861-32977060
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTCACCTTAACCACCAATAGGTT
3' ss Score
5.48
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GCCGTCGTGACCCTGGGCGCTGCTGCAGGGGGCATACTGGGCGGCTGGCTCCTGGACCGTGCAGGGCGCAAGCTGAGCCTCTTGCTCTGCACCGTGCCCTTCGTGACTGGCTTTGCTGTCATCACCGCGGCCCGGGATGTGTGGATGCTGCTCGGAGGCCGCCTCCTCACCGGCCTTGCCTGCGGAGTCGCCTCACTAGTGGCACCG
Seq A exon
GTTTACATCTCGGAAATCGCCTACCCAGCTGTCCGAGGACTGCTCGGCTCCTGTGTGCAGCTGATGGTTGTCACTGGCATCCTCCTGGCCTATGTGGCAG
Seq C2 exon
GCTGGGTCCTAGAGTGGCGCTGGCTGGCCGTGCTGGGCTGTGTGCCCCCCACCCTCATGCTGCTGCTCATGTGCTACATGCCCGAGACCCCACGTTTTCTCCTCACTCAACACCAGTACCAGGAGGCCATGGCTGCCTTGCGCTTCCTGTGGGGCTCTGAGGAGGGCTGGGAAGAGCCCCCTGTTGGGGCTGAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791_MULTIEX2-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.134
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(15.2=100)
A:
PF0008319=Sugar_tr=FE(12.4=100)
C2:
PF0008319=Sugar_tr=FE(14.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGTGTGGATGCTGCTC
R:
CTTCCCAGCCCTCCTCAGAG
Band lengths:
248-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types