BtaEX6046216 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006957 | SLC2A8
Description
Bos taurus solute carrier family 2 (facilitated glucose transporter), member 8 (SLC2A8), mRNA. [Source:RefSeq mRNA;Acc:NM_201528]
Coordinates
chr11:98162302-98166064:+
Coord C1 exon
chr11:98162302-98162508
Coord A exon
chr11:98164334-98164433
Coord C2 exon
chr11:98165865-98166064
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTCGTCTTAATTACCAACAGGTC
3' ss Score
9.31
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GCCATCGTGACCCTGGGCGCCGCGGCCGGGGGCGTGCTGGGCGGCTGGCTCCTGGACCGCGCGGGGCGCAAGCTGAGCCTAGTCCTCTGCGCCTTGCCCTTCGTGGCCGGCTTCGCCGTCATCACCGCGGCTCAGAACCTGTGGATGCTGCTCGGAGGCCGCCTGCTCACCGGCCTGGCCTGCGGCATTGCCTCGCTCGTGGCCCCG
Seq A exon
GTCTATATCTCTGAAATTGCCTACCCTGAGGTGCGAGGGCTGCTCGGCTCCTGTGTGCAGCTGATGGTAGTCACAGGCATCCTCCTAGCCTACCTGGCAG
Seq C2 exon
GCTGGGTGCTCGAGTGGCGCTGGCTGGCCGTGCTGGGCTGTGTGGCCCCCTCCTTCATGCTGCTGCTCATGTGTTTCATGCCTGAGACCCCTCGCTTCCTGCTGTCTCAGCACAAGCACCAGGAGGCCATGGCCGCCATGCAGTTCCTGTGGGGCTATGCCCAGGGTTGGGAGGAGCCTCCCCTTGGGGCTCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006957-'3-3,'3-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(15.2=100)
A:
PF0008319=Sugar_tr=FE(7.4=100)
C2:
PF0008319=Sugar_tr=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCCTAGTCCTCTGCGC
R:
CTGGTGCTTGTGCTGAGACAG
Band lengths:
257-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]