GgaEX0000865 @ galGal3
Exon Skipping
Gene
ENSGALG00000000853 | F1NDA6_CHICK
Description
NA
Coordinates
chr17:11114050-11122270:+
Coord C1 exon
chr17:11114050-11114209
Coord A exon
chr17:11120861-11121034
Coord C2 exon
chr17:11122125-11122270
Length
174 bp
Sequences
Splice sites
3' ss Seq
AGTTATTGCTTACTTTTCAGGGA
3' ss Score
7.08
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGTGCAAAACAAGAAGCTGTACCTGGCCACGTTCGCTGCTGTCCTGGGACCACTTAGCTTTGGCTTCGTGCTAGGCTATAGCTCACCTGCTATCCCAGAGCTGAGGAAAATCGACAATCCGAAATTACGATTGGACAGCAATCAGGCATCGTGGTTTGGG
Seq A exon
GGATGATCATGGCTCTCAGTACTGCGCTGTTTGGGTTTTACTTTAAAATGGTCCTTCCAAATGGGAACAACTCATCAAATACTGATCTGTGGTTCACTTTAAATTCAGTAACTCCAGGAACAGATACTAGACTATCCTGGCTTGCAGTGGTAAGCCTAGGACTCTTTGTTGCTG
Seq C2 exon
GTTTTGCCCTTGGCTGGGGTCCAGTTCCATGGCTGGTAATGTCTGAAATCTTCCCACTTAAAGCAAGGGGTGTATCAAGCAGTGCCTGTGTGTTAACAAACTGGGTTATGGCCTTTCTGGTGACCAAGGAATTTCACGATTTTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853_MULTIEX1-6/6=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(10.0=83.3)
A:
PF0008319=Sugar_tr=FE(12.8=100)
C2:
PF0008319=Sugar_tr=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTGGGACCACTTAGCT
R:
CTTGGTCACCAGAAAGGCCAT
Band lengths:
250-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]