MmuEX0043044 @ mm10
Exon Skipping
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32974838-32976280:-
Coord C1 exon
chr2:32976137-32976280
Coord A exon
chr2:32975314-32975484
Coord C2 exon
chr2:32974838-32974983
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGAGCTGTCTTTGCCTGCAGGTG
3' ss Score
11.54
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
GGCTTCCAGCTGGCCCTGCTGAGGCGCCCTGGCATCTACAAGCCCCTCATCATCGGCATTTCCCTCATGGTCTTCCAGCAGCTGTCAGGGGTCAATGCTATCATGTTCTATGCCAACAGCATCTTCGAGGAGGCCAAGTTCAAG
Seq A exon
GTGTGATCATGGTGTTCAGTATGAGTGCCTTTGGTACCTACTTCAAACTGACCCAGAGCCTCCCCAGCAACTCCTCCCACGTAGGCCTGGTGCCCATCGCGGCGGAGCCTGTGGATGTCCAAGTGGGACTGGCCTGGCTGGCTGTAGGCAGCATGTGCCTCTTCATTGCTG
Seq C2 exon
GCTTTGCGGTGGGCTGGGGACCCATCCCCTGGCTCCTCATGTCAGAGATCTTCCCTCTGCATGTCAAGGGTGTGGCTACCGGCATCTGTGTCCTCACCAACTGGTTCATGGCCTTTCTAGTGACCAAAGAGTTCAGCAGCGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(41.7=96.2)
A:
PF0008319=Sugar_tr=FE(12.8=100)
C2:
PF0008319=Sugar_tr=FE(10.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCATCATCGGCATTTCCC
R:
CGCTGCTGAACTCTTTGGTCA
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types