MmuINT0146140 @ mm10
Intron Retention
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32975920-32976280:-
Coord C1 exon
chr2:32976137-32976280
Coord A exon
chr2:32976029-32976136
Coord C2 exon
chr2:32975920-32976028
Length
108 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TAGCTTCTCCCCTCCCCCAGGAC
3' ss Score
9.56
Exon sequences
Seq C1 exon
GGCTTCCAGCTGGCCCTGCTGAGGCGCCCTGGCATCTACAAGCCCCTCATCATCGGCATTTCCCTCATGGTCTTCCAGCAGCTGTCAGGGGTCAATGCTATCATGTTCTATGCCAACAGCATCTTCGAGGAGGCCAAGTTCAAG
Seq A exon
GTAAGAGGCTTCTCCCCAGCTTGCCTCACGCCTCCTGGAGCCTAGGGCTCAGCCAGAGAGGGGAAGGACTTGTCTCTCTCTAGCAGACTAGCTTCTCCCCTCCCCCAG
Seq C2 exon
GACAGCAGCCTGGCCTCGGTCACTGTGGGCATAATCCAGGTCCTGTTCACTGCTGTGGCGGCCCTCATCATGGACAGAGCAGGGCGAAGGCTGCTCCTGGCCTTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791:ENSMUST00000028129:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(41.7=96.2)
A:
NA
C2:
PF0008319=Sugar_tr=FE(8.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGCTGGCCCTGCT
R:
GACAAGGCCAGGAGCAGC
Band lengths:
249-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types