HsaINT0152369 @ hg19
Intron Retention
Gene
ENSG00000136856 | SLC2A8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:HGNC Symbol;Acc:13812]
Coordinates
chr9:130165939-130166346:+
Coord C1 exon
chr9:130165939-130166082
Coord A exon
chr9:130166083-130166237
Coord C2 exon
chr9:130166238-130166346
Length
155 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CTGGGCTCTGTCTCCCCCAGGAC
3' ss Score
11.18
Exon sequences
Seq C1 exon
AGCTTTCACCTGGCCCTGCTGCGGCAGCCCGGCATCTACAAGCCCTTCATCATCGGCGTCTCCCTGATGGCCTTCCAGCAGCTGTCGGGGGTCAACGCCGTCATGTTCTATGCAGAGACCATCTTTGAAGAGGCCAAGTTCAAG
Seq A exon
GTAAAAGGGCCCTGCCTGGCCTGCCTCGTCCAGCCCCCACATAGATGGAGCTTCCTCCCCAAGCCCAGGGCCCAGCCATCCAGCACAGGCCTGGAGAGGGAGGGACCCAGCTCTCAGCTGGCCCACCTGACCTGCCTGGGCTCTGTCTCCCCCAG
Seq C2 exon
GACAGCAGCCTGGCCTCGGTCGTCGTGGGTGTCATCCAGGTGCTGTTCACAGCTGTGGCGGCTCTCATCATGGACAGAGCAGGGCGGAGGCTGCTCCTGGTCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136856-SLC2A8:NM_014580:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(11.8=96.2)
A:
NA
C2:
PF0008319=Sugar_tr=PD(18.4=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCACCTGGCCCTGCTG
R:
CTGACAAGACCAGGAGCAGC
Band lengths:
251-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)