RnoEX0082175 @ rn6
Exon Skipping
Gene
ENSRNOG00000022274 | Slc2a8
Description
solute carrier family 2 member 8 [Source:RGD Symbol;Acc:620611]
Coordinates
chr3:12022052-12023501:-
Coord C1 exon
chr3:12023358-12023501
Coord A exon
chr3:12022523-12022696
Coord C2 exon
chr3:12022052-12022197
Length
174 bp
Sequences
Splice sites
3' ss Seq
GCCCGAGCCTTTGCCTGCAGGTG
3' ss Score
6.99
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
GGCTTCCAGCTGGCTATGCTGAGGCGCCCTGGTGTCCACAAGCCCCTCATCATCGGCATTTGCCTCATGGTCTTCCAGCAGCTGTCAGGGGTCAACGCCATCATGTTCTATGCCAACACCATCTTTGAGGAGGCCAAGTTCAAG
Seq A exon
GTGTGATCATGGTTTTCAGCATGAGCGCCTTTGGTACCTACTTCAAACTGACCCAGAGTGGCCCCAGCAACTCCTCCCATGTAGGCCTCCTGGTGCCCATCTCCGCAGAGCCTGCTGATGTTCACCTGGGGCTGGCCTGGCTGGCTGTAGGCAGCATGTGCCTCTTCATCGCTG
Seq C2 exon
GTTTTGCAGTAGGCTGGGGACCCATCCCCTGGCTCCTCATGTCAGAGATCTTCCCTCTGCACATCAAGGGTGTGGCTACCGGCGTCTGTGTCCTCACCAACTGGTTCATGGCCTTTCTGGTGACCAAAGAGTTTAACAGCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022274_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(10.5=100)
A:
PF0008319=Sugar_tr=FE(13.0=100)
C2:
PF0008319=Sugar_tr=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCACAAGCCCCTCATCAT
R:
TCTTTGGTCACCAGAAAGGCC
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]