RnoINT0137483 @ rn6
Intron Retention
Gene
ENSRNOG00000022274 | Slc2a8
Description
solute carrier family 2 member 8 [Source:RGD Symbol;Acc:620611]
Coordinates
chr3:12022523-12023249:-
Coord C1 exon
chr3:12023141-12023249
Coord A exon
chr3:12022697-12023140
Coord C2 exon
chr3:12022523-12022696
Length
444 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
GCCCGAGCCTTTGCCTGCAGGTG
3' ss Score
6.99
Exon sequences
Seq C1 exon
GACAGCAGCCTGGCCTCGGTCACTGTGGGCATCATCCAGGTTCTGTTCACTGCTGTGGCGGCCCTCATCATGGACAGAGCAGGGCGAAAACTGCTTCTGGCCTTGTCGG
Seq A exon
GTGAGGCCTGATGGGGAGGGCCCAGCCTCCCCAGCTCATGGGGGGAGACGGGGCCAGGGAGGTGATACATTATGACTGGTTCTTTTGAGCAAGTGACTTTCTGTCCCCCTATTTCCTAGTCTGAAATGGGGAGAGGGTCGTGGTGAGGTCAGGTCCTGGGCAGTAGCTTTGGCCTACACATCCATGGTGCCCACTGGCAGCTGTGAAGACCACTGTGGGTGTGGGGTTGAACGCTGCTTCTGCAGTGGAGAGACTCCTCAGGAACTTCCTGGCATTTGCTGAGGTCTGAGGTCAGGGTAGGAATGCTGGCCAGTCAGGGGCTTCCATGGCCAGGGCACAAGACTATTGTGCCTAGCATGCCTCTCTCTGAGAGACACACCACCCTCTAAGTCCTGGGTGCTGCTGTGTCCCCAGCATCCAGCAAGCCCGAGCCTTTGCCTGCAG
Seq C2 exon
GTGTGATCATGGTTTTCAGCATGAGCGCCTTTGGTACCTACTTCAAACTGACCCAGAGTGGCCCCAGCAACTCCTCCCATGTAGGCCTCCTGGTGCCCATCTCCGCAGAGCCTGCTGATGTTCACCTGGGGCTGGCCTGGCTGGCTGTAGGCAGCATGTGCCTCTTCATCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022274:ENSRNOT00000022327:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(8.1=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGGCCTCGGTCAC
R:
CAGCGATGAAGAGGCACATGC
Band lengths:
278-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]