GgaINT0124780 @ galGal4
Intron Retention
Gene
ENSGALG00000000853 | SLC2A8
Description
solute carrier family 2, facilitated glucose transporter member 8 [Source:RefSeq peptide;Acc:NP_989706]
Coordinates
chr17:10391652-10392422:+
Coord C1 exon
chr17:10391652-10391760
Coord A exon
chr17:10391761-10392248
Coord C2 exon
chr17:10392249-10392422
Length
488 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
3' ss Seq
AGTTATTGCTTACTTTTCAGGGA
3' ss Score
7.08
Exon sequences
Seq C1 exon
GACAGCAGAATGGCTTCTGTTGTTGTGGGTTTCATACAAGTATGTTTCACTGCTGTGGCTGCACTTATCATAGATAAAACTGGAAGAAAAGTGCTGCTTTATGTGTCTG
Seq A exon
GTAAAATAACTTACTTTTGTTCCATGAGAAGAAATATGTAGAGTACCAAAAAGTGTTGGAACTACTGGGGGAATTAAGTATTACAATTTATTTATTTCAAGTGCTTTGTTTTGTAAGTGGATTATAACTGATGGCTTAAAACCTGATTCATAAGAGAACATGGTCATGTTATATGTACTTTGTAGGCTGAACTCCTTGAAACTACTTACAGCTATCTTTTTGTCTTTTTACCAGGCTGATTTTTACTTTGGACAAATGATTGATAGTTGACACATTGCACACTCAGTAGTAATGACTGCTGTAAAGACTGGTTTAATTTGTGTGTGGAATGACTGACGTCTTTCATTCTTGTTTAGGCTAATGTTTATTTCCAATAACATATTTTTAGAAACACTTCTGCTAGAGCCTGCATATCTTGCATTTAGCTCTCAGAAAGAAGAGTACCTAAGCAACTATCATTGACAGCTTAGTTATTGCTTACTTTTCAG
Seq C2 exon
GGATGATCATGGCTCTCAGTACTGCGCTGTTTGGGTTTTACTTTAAAATGGTCCTTCCAAATGGGAACAACTCATCAAATACTGATCTGTGGTTCACTTTAAATTCAGTAACTCCAGGAACAGATACTAGACTATCCTGGCTTGCAGTGGTAAGCCTAGGACTCTTTGTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853:ENSGALT00000001251:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(8.0=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCTGTTGTTGTGGGTT
R:
CAGCAACAAAGAGTCCTAGGCT
Band lengths:
273-761
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]