GgaEX0000862 @ galGal4
Exon Skipping
Gene
ENSGALG00000000853 | SLC2A8
Description
solute carrier family 2, facilitated glucose transporter member 8 [Source:RefSeq peptide;Acc:NP_989706]
Coordinates
chr17:10385438-10393658:+
Coord C1 exon
chr17:10385438-10385597
Coord A exon
chr17:10390168-10390379
Coord C2 exon
chr17:10393513-10393658
Length
212 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTTTGTTGTGCAGGAT
3' ss Score
10.55
5' ss Seq
GAGGTGATG
5' ss Score
4.44
Exon sequences
Seq C1 exon
AGTGCAAAACAAGAAGCTGTACCTGGCCACGTTCGCTGCTGTCCTGGGACCACTTAGCTTTGGCTTCGTGCTAGGCTATAGCTCACCTGCTATCCCAGAGCTGAGGAAAATCGACAATCCGAAATTACGATTGGACAGCAATCAGGCATCGTGGTTTGGG
Seq A exon
GATTGACACTAAAATGGCACTGGCTGGCAGTATTATGTTCTTTTCCACCATGCGTAATGCTTTTGTTTATGTTGTTCATGCCTGAAACACCGAGATTTCTGCTGGATCAGAAGAAACGTGCAGAAGCTATAGCTGCTTTACAGTTTCTGCGAGGACCATACGTGGACCATGAATGGGAATGCAGGCAAATTGAAGCTAATGTTGAGGAGGAG
Seq C2 exon
GTTTTGCCCTTGGCTGGGGTCCAGTTCCATGGCTGGTAATGTCTGAAATCTTCCCACTTAAAGCAAGGGGTGTATCAAGCAGTGCCTGTGTGTTAACAAACTGGGTTATGGCCTTTCTGGTGACCAAGGAATTTCACGATTTTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853_MULTIEX1-3/6=C1-C2
Average complexity
C3*
Mappability confidence:
80%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(10.0=83.3)
A:
PF0008319=Sugar_tr=FE(15.5=100)
C2:
PF0008319=Sugar_tr=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGAAGCTGTACCTGGCC
R:
TCGTGAAATTCCTTGGTCACCA
Band lengths:
292-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]