BtaEX6046215 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006957 | SLC2A8
Description
Bos taurus solute carrier family 2 (facilitated glucose transporter), member 8 (SLC2A8), mRNA. [Source:RefSeq mRNA;Acc:NM_201528]
Coordinates
chr11:98164334-98166925:+
Coord C1 exon
chr11:98164334-98164433
Coord A exon
chr11:98165865-98166064
Coord C2 exon
chr11:98166782-98166925
Length
200 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCACCCCACCCTCAGGCT
3' ss Score
8.28
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCTATATCTCTGAAATTGCCTACCCTGAGGTGCGAGGGCTGCTCGGCTCCTGTGTGCAGCTGATGGTAGTCACAGGCATCCTCCTAGCCTACCTGGCAG
Seq A exon
GCTGGGTGCTCGAGTGGCGCTGGCTGGCCGTGCTGGGCTGTGTGGCCCCCTCCTTCATGCTGCTGCTCATGTGTTTCATGCCTGAGACCCCTCGCTTCCTGCTGTCTCAGCACAAGCACCAGGAGGCCATGGCCGCCATGCAGTTCCTGTGGGGCTATGCCCAGGGTTGGGAGGAGCCTCCCCTTGGGGCTCAGCACCAG
Seq C2 exon
GACTTCCACGTGGCCCAGCTGCGGCGTCCTGGTGTCTACAAGCCCTTCATCATCGGCATCTCCCTGATGGCCTTCCAGCAGCTGTCAGGCGTCAATGCCGTCATGTTCTACGCGGAGACCATCTTTGAGGAGGCTAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006957-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(7.4=100)
A:
PF0008319=Sugar_tr=FE(14.8=100)
C2:
PF0008319=Sugar_tr=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTATATCTCTGAAATTGCCTACCC
R:
CTTGAACTTAGCCTCCTCAAAGA
Band lengths:
244-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]