GgaEX0000864 @ galGal4
Exon Skipping
Gene
ENSGALG00000000853 | SLC2A8
Description
solute carrier family 2, facilitated glucose transporter member 8 [Source:RefSeq peptide;Acc:NP_989706]
Coordinates
chr17:10390950-10392422:+
Coord C1 exon
chr17:10390950-10391093
Coord A exon
chr17:10391652-10391760
Coord C2 exon
chr17:10392249-10392422
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTACTTTATTTCAGGAC
3' ss Score
10.71
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
GGACTAAGCCTCTTTGAATTTAAGAATCCTTCAATCTACAGGCCACTTCTTATTGGTGTGATTCTGATGTTTCTCCAGCAAGTAACAGGCATTAATGCAGTTATGTTTTATGCAGAAACAATCTTTGAAGATGCAAACTTCCAG
Seq A exon
GACAGCAGAATGGCTTCTGTTGTTGTGGGTTTCATACAAGTATGTTTCACTGCTGTGGCTGCACTTATCATAGATAAAACTGGAAGAAAAGTGCTGCTTTATGTGTCTG
Seq C2 exon
GGATGATCATGGCTCTCAGTACTGCGCTGTTTGGGTTTTACTTTAAAATGGTCCTTCCAAATGGGAACAACTCATCAAATACTGATCTGTGGTTCACTTTAAATTCAGTAACTCCAGGAACAGATACTAGACTATCCTGGCTTGCAGTGGTAAGCCTAGGACTCTTTGTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853-'9-22,'9-21,11-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(10.4=100)
A:
PF0008319=Sugar_tr=FE(8.0=100)
C2:
PF0008319=Sugar_tr=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCCACTTCTTATTGGTGTG
R:
CCACTGCAAGCCAGGATAGTC
Band lengths:
257-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]