HsaEX0059310 @ hg38
Exon Skipping
Gene
ENSG00000136856 | SLC2A8
Description
solute carrier family 2 member 8 [Source:HGNC Symbol;Acc:HGNC:13812]
Coordinates
chr9:127403660-127404991:+
Coord C1 exon
chr9:127403660-127403803
Coord A exon
chr9:127403959-127404067
Coord C2 exon
chr9:127404818-127404991
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGGGCTCTGTCTCCCCCAGGAC
3' ss Score
11.18
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGCTTTCACCTGGCCCTGCTGCGGCAGCCCGGCATCTACAAGCCCTTCATCATCGGCGTCTCCCTGATGGCCTTCCAGCAGCTGTCGGGGGTCAACGCCGTCATGTTCTATGCAGAGACCATCTTTGAAGAGGCCAAGTTCAAG
Seq A exon
GACAGCAGCCTGGCCTCGGTCGTCGTGGGTGTCATCCAGGTGCTGTTCACAGCTGTGGCGGCTCTCATCATGGACAGAGCAGGGCGGAGGCTGCTCCTGGTCTTGTCAG
Seq C2 exon
GTGTGGTCATGGTGTTCAGCACGAGTGCCTTCGGCGCCTACTTCAAGCTGACCCAGGGTGGCCCTGGCAACTCCTCGCACGTGGCCATCTCGGCGCCTGTCTCTGCACAGCCTGTTGATGCCAGCGTGGGGCTGGCCTGGCTGGCCGTGGGCAGCATGTGCCTCTTCATCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136856-'12-21,'12-17,14-21=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(11.8=96.2)
A:
PF0008319=Sugar_tr=PD(18.4=94.6)
C2:
PF0008319=Sugar_tr=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCATCTACAAGCCCTTCAT
R:
CCACGCTGGCATCAACAGG
Band lengths:
244-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development