MmuEX0043043 @ mm9
Exon Skipping
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32830834-32831800:-
Coord C1 exon
chr2:32831657-32831800
Coord A exon
chr2:32831440-32831548
Coord C2 exon
chr2:32830834-32831004
Length
109 bp
Sequences
Splice sites
3' ss Seq
TAGCTTCTCCCCTCCCCCAGGAC
3' ss Score
9.56
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GGCTTCCAGCTGGCCCTGCTGAGGCGCCCTGGCATCTACAAGCCCCTCATCATCGGCATTTCCCTCATGGTCTTCCAGCAGCTGTCAGGGGTCAATGCTATCATGTTCTATGCCAACAGCATCTTCGAGGAGGCCAAGTTCAAG
Seq A exon
GACAGCAGCCTGGCCTCGGTCACTGTGGGCATAATCCAGGTCCTGTTCACTGCTGTGGCGGCCCTCATCATGGACAGAGCAGGGCGAAGGCTGCTCCTGGCCTTGTCGG
Seq C2 exon
GTGTGATCATGGTGTTCAGTATGAGTGCCTTTGGTACCTACTTCAAACTGACCCAGAGCCTCCCCAGCAACTCCTCCCACGTAGGCCTGGTGCCCATCGCGGCGGAGCCTGTGGATGTCCAAGTGGGACTGGCCTGGCTGGCTGTAGGCAGCATGTGCCTCTTCATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(10.5=100)
A:
PF0008319=Sugar_tr=FE(8.1=100)
C2:
PF0008319=Sugar_tr=FE(12.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTTCCAGCAGCTGTCAG
R:
AGCAATGAAGAGGCACATGCT
Band lengths:
247-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: