MmuINT0146141 @ mm9
Intron Retention
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32830834-32831548:-
Coord C1 exon
chr2:32831440-32831548
Coord A exon
chr2:32831005-32831439
Coord C2 exon
chr2:32830834-32831004
Length
435 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
TGAGCTGTCTTTGCCTGCAGGTG
3' ss Score
11.54
Exon sequences
Seq C1 exon
GACAGCAGCCTGGCCTCGGTCACTGTGGGCATAATCCAGGTCCTGTTCACTGCTGTGGCGGCCCTCATCATGGACAGAGCAGGGCGAAGGCTGCTCCTGGCCTTGTCGG
Seq A exon
GTGAGGCCTGACGGGGAGGGCTCAGCCTCCCCAGCTCCCACGGGGAGACAGGGCCAGGGAGGTGATCCTTTATGACTGGTTCTTTTGAGCAAGTGACTGTCCCCAAGCCCGTTTCCTACTCTGAGATAGGGAAAGGGCTGTGGTGATGTCAGGCTCTGGGCAGTAGCTTGGGCCTCCACATGCATGGAGCCCCAGGCAGCTGTGGCGATCCCTGTGGGTGTGGGGTTTGACACTGCTGCTCCTGCTCATGCTGCAGAGAGACTCCTCGGGAAGTTCCCAGCATTTGCTGAGGTCTGAGGTCCAAAGCAGGGTAGGAGTGCTGGCCAGTCAGGGGCTTCCGTGCAAGACTCTCTCAGAGAGCCACCCTGCCCTCTAAGTCCTGGGTGCTGCCGCATCCCCAGCATCCTGTCTAGCCTGAGCTGTCTTTGCCTGCAG
Seq C2 exon
GTGTGATCATGGTGTTCAGTATGAGTGCCTTTGGTACCTACTTCAAACTGACCCAGAGCCTCCCCAGCAACTCCTCCCACGTAGGCCTGGTGCCCATCGCGGCGGAGCCTGTGGATGTCCAAGTGGGACTGGCCTGGCTGGCTGTAGGCAGCATGTGCCTCTTCATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791-Slc2a8:NM_019488:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(8.1=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCCTCGGTCACTGT
R:
AGCAATGAAGAGGCACATGCT
Band lengths:
271-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: