RnoINT0137484 @ rn6
Intron Retention
Gene
ENSRNOG00000022274 | Slc2a8
Description
solute carrier family 2 member 8 [Source:RGD Symbol;Acc:620611]
Coordinates
chr3:12022052-12022696:-
Coord C1 exon
chr3:12022523-12022696
Coord A exon
chr3:12022198-12022522
Coord C2 exon
chr3:12022052-12022197
Length
325 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
3' ss Seq
ACACTGCCTTGTCCCCACAGGTT
3' ss Score
12.77
Exon sequences
Seq C1 exon
GTGTGATCATGGTTTTCAGCATGAGCGCCTTTGGTACCTACTTCAAACTGACCCAGAGTGGCCCCAGCAACTCCTCCCATGTAGGCCTCCTGGTGCCCATCTCCGCAGAGCCTGCTGATGTTCACCTGGGGCTGGCCTGGCTGGCTGTAGGCAGCATGTGCCTCTTCATCGCTG
Seq A exon
GTAAAGAGAGACTAGAGGGACACTGGGTGAAGGCTGTTGTCCCTCTAACCCGCCATGCCAAGTTCCGGAGCACTCAGCTTCAAATCGAGTTTTACCCCTCTGCCCTCGGAGCATAACTTCTGTGCTGATGGCTCTGACCATGTGCTGGGAACTGAGCTAAACCCTTTCACATAATCTCCATGACAGCTTGCAAGCAGGTCCCATCCTTGTCCTGATACCTAAAAGGGAAAGGTCTAGTGCAAGGCCTCCCAGCAGGGTTGAGGGCTGATAGGACCCCTCAGGACTAGCCCAGCATGTGTGCTGTGACACTGCCTTGTCCCCACAG
Seq C2 exon
GTTTTGCAGTAGGCTGGGGACCCATCCCCTGGCTCCTCATGTCAGAGATCTTCCCTCTGCACATCAAGGGTGTGGCTACCGGCGTCTGTGTCCTCACCAACTGGTTCATGGCCTTTCTGGTGACCAAAGAGTTTAACAGCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022274:ENSRNOT00000022327:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(13.0=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGATCATGGTTTTCAGCA
R:
TGATGCTGTTAAACTCTTTGGTCAC
Band lengths:
318-643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]