MmuINT0146142 @ mm10
Intron Retention
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32974838-32975484:-
Coord C1 exon
chr2:32975314-32975484
Coord A exon
chr2:32974984-32975313
Coord C2 exon
chr2:32974838-32974983
Length
330 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
3' ss Seq
ACTCTGCCTTGTTCCCACAGGCT
3' ss Score
11.92
Exon sequences
Seq C1 exon
GTGTGATCATGGTGTTCAGTATGAGTGCCTTTGGTACCTACTTCAAACTGACCCAGAGCCTCCCCAGCAACTCCTCCCACGTAGGCCTGGTGCCCATCGCGGCGGAGCCTGTGGATGTCCAAGTGGGACTGGCCTGGCTGGCTGTAGGCAGCATGTGCCTCTTCATTGCTG
Seq A exon
GTAAAGGGGACTCAGGGGAGCCTGGGTGGAGGCTGTTGTCCCTCCACAGTGCCAAGTTCTGTAGCACTCAGCTTCACATCTAGTTTTACTTGGTTTTACCCCTTTGCCCCTAGGCGCATGACTTCTGTGCTAATGGCTCTGACCATGTACTGGGCACTGAACTAAATCCTTTCATATAATCTCCATGACAGCTTGCAAGCAGGTCCCATCCTTGTCTTGATACCTGAAAGGGCAGGGGCTGGCCCAAGGCCTCCCAGCAGGGTTGAGAGCAGATAGGACCCCTAAGGCCTAGCCCAGTGTGCACGCTGTAACTCTGCCTTGTTCCCACAG
Seq C2 exon
GCTTTGCGGTGGGCTGGGGACCCATCCCCTGGCTCCTCATGTCAGAGATCTTCCCTCTGCATGTCAAGGGTGTGGCTACCGGCATCTGTGTCCTCACCAACTGGTTCATGGCCTTTCTAGTGACCAAAGAGTTCAGCAGCGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791:ENSMUST00000028129:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(12.8=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGGTGTTCAGTATGAGTGCC
R:
TGACGCTGCTGAACTCTTTGG
Band lengths:
310-640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types