DreINT0150537 @ danRer10
Intron Retention
Gene
ENSDARG00000104278 | slc2a8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-030829-25]
Coordinates
chr5:65302712-65303211:+
Coord C1 exon
chr5:65302712-65302888
Coord A exon
chr5:65302889-65303065
Coord C2 exon
chr5:65303066-65303211
Length
177 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
CATAAGCATGTGTTTACCAGGAT
3' ss Score
3.85
Exon sequences
Seq C1 exon
GTGTCGTCATGTGTATTAGCGAAGCAGTGTTTGGAGTGTACTTTAAGCTGACTGTGATGAAGCCCAATAACTCCTCATTGACCAGTGTGCTAACGGACACCCATGGTCTTCTGGAAGATCAGCCCTCTGCAGACCTGGCCTGGTTGGCTGTGGGAAGCATGGGCTTTTTCATTGCAG
Seq A exon
GTTAGAAGGACTGTATTTCTCTGAACAAGAATTATTTAGCAGTACTACTGTATGTCTTTTCAAAGAAAAAATTCTTAAAACAGTTTACATCTTGAATTTGTTCTGTACTTATGTACATTAATATCCATTCAGTGAGCAAACTGCATTTATTCTGACTCATAAGCATGTGTTTACCAG
Seq C2 exon
GATTTGCTATTGGTTGGGGTCCTACTCCGTGGCTGGTGATGTCCGAGATCTTCCCCACGCGGGTGAGGGGATTAGGCAGTGCTCTGTGTGTGCTTACTAACTGGACCTGTGCCTTCATTGTCACCAAAACCTTCCAGAACCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104278:ENSDART00000166432:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(13.0=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACTGTGATGAAGCCCAA
R:
GGTGACAATGAAGGCACAGGT
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]