BtaINT0135176 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006957 | SLC2A8
Description
Bos taurus solute carrier family 2 (facilitated glucose transporter), member 8 (SLC2A8), mRNA. [Source:RefSeq mRNA;Acc:NM_201528]
Coordinates
chr11:98167862-98168529:+
Coord C1 exon
chr11:98167862-98168035
Coord A exon
chr11:98168036-98168383
Coord C2 exon
chr11:98168384-98168529
Length
348 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GGCCTTTCCTGCCCTTGCAGGCT
3' ss Score
10
Exon sequences
Seq C1 exon
GTGTGGTCATGGTGTTCAGCACCAGCGCCTTTGGTGCCTACTTCAAGCTGACCGAGGGCGGCCCCAGCAACTCCTCCCACGTGGACCTCCCGGCGCTCATCTCCATGGAGGCCGCCGATACCAACGTGGGGCTGGCCTGGCTGGCAGTGGGCAGCATGTGCCTCTTCATCGCCG
Seq A exon
GTGAGTGGGGTGCTGAGGGGAGGTTGAGGGGGCCACCCTGTCGCTGCCAGGTTCCCGTGGCTCCCAGGAGTCCCGGCCTGCTCAGCCTTACCCCTGGGTTTACAGCTCTGACCGTGTGCCGGGCACCGGCTCAGCCCCCCTCTGCTCCTTTCACGTCATCCCCACAAGTGCCCTCCGAGCAGGCCCCGTTCCTGTGCTGTTCTGTAGAGCCAAGGCCTGATGTGTCAGGAGTGAGGGGAGTGACCTGAGTCCCCAGGCTGAATCCGGGCCCCACTTTAGCCTGGGCGGTCTTCGGCGAGCCGAGCACCGCCCGGCCCCGTGGACCTGAGGCCTTTCCTGCCCTTGCAG
Seq C2 exon
GCTTCGCTGTGGGCTGGGGGCCCATCCCGTGGCTCCTCATGTCTGAGATCTTCCCTCTGCATGTCAAGGGCGTGGCCACCGGCGTCTGCGTCCTCACCAACTGGTTCATGGCCTTTCTGGTGACCAAAGAGTTCAGCAGTCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006957:ENSBTAT00000009144:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(13.0=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGTCATGGTGTTCAGCA
R:
TGAGACTGCTGAACTCTTTGGT
Band lengths:
318-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development