GgaEX1053247 @ galGal3
Exon Skipping
Gene
ENSGALG00000002982 | F1NAR8_CHICK
Description
NA
Coordinates
chr17:7612050-7612975:-
Coord C1 exon
chr17:7612887-7612975
Coord A exon
chr17:7612337-7612499
Coord C2 exon
chr17:7612050-7612256
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTTGCTCTGCCCACCTCCAGGAG
3' ss Score
9.84
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
GTGCGGGAGCCGTTGGTGAGGAGGTCAAGCTCCTCATACCACACCTTCCCTGAGAGCATCCGGAGGGGGCTGGACAAGGAGTACCTGCA
Seq A exon
GAGCCTCAACAACAAGCGGCTCTACATGGCAGTGTTTGCTGCCGTGCTGGGGAACTTCAGCTTTGGCTTTGCCCTGGTTTACCCCTCACCCGTGATCCCTGCCCTGGAGACTCACCCCAACCCCGCGCTGAGGCTGGACCGCTACAGAGCATCCTGGTTTGGG
Seq C2 exon
TCTGTGTTCATGCTGGGGGCGGCGGCGGGGGGGCTCAGCACCATGCTTCTCAATGACCACCTGGGCCGCAAGCTCAGCATCATGTTCTCAGCCGTGCCCTCCGCCGTGGGATATGCGCTGATGGCCAGCGCCCAGGGCATCGAGATGCTGCTGCTGGGCCGCGTGCTTACGGGCTACGCCGGTGGCGTGACGTCTGCCTCCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002982-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
80%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(10.9=81.8)
C2:
PF0008319=Sugar_tr=FE(16.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACCACACCTTCCCTGAGAGC
R:
GATGGAGGCAGACGTCACG
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]