BtaEX6047330 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001824 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr11:104422751-104424788:-
Coord C1 exon
chr11:104424676-104424788
Coord A exon
chr11:104424004-104424166
Coord C2 exon
chr11:104422751-104422957
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACTGCCCCCACACACACTAGGGT
3' ss Score
5.35
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
CCCGGGCGGGAGGAGCCGGTCATGCAGGAGCCGCTGCTGGGAGCCGAAGGCCGGGACTATGACACCTTCCCCGAGAAGCCGCCCCCGTCACCAGGGGAGAGGACGCGGGTCGG
Seq A exon
GGTCCTGCAGAACAAGAGAGTGTTCCTGGCTACCTTCGCTGCTGTGCTGGGCAATTTCAGCTTCGGGTATGCCCTGGTCTACACGTCCCCCGTCATCCCCGCCCTGGAGCACTCCTCGGATCCAAACCTGAATCTGACCAAAACCCAGGCATCCTGGTTCGGG
Seq C2 exon
TCCGTGTTCACCCTGGGTGCGGCGGCCGGGGGACTCAGTGCCATGGTCCTCAATGACCTCCTGGGCCGGAAACTCAGCATCATGTTCTCAGCTGTGCCCTCGGCAGCCGGCTATGCGCTGATGGCAGGCGCCCACGGCCTCTGGATGCTGCTTCTGGGAAGGATGCTGACAGGCTTCGCAGGGGGGCTCACAGCTGCCTGCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001824-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(9.8=81.8)
C2:
PF0008319=Sugar_tr=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGGGACTATGACACCTTC
R:
GAAGCCTGTCAGCATCCTTCC
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]